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Bioimage

Bio-Image Summer School Paris 2005

Author name initial(s) from year to year Publication type Display format limit
20 Publications
1 Probing protein mechanics: Residue-level properties and their use in defining domains
I. Navizet, F. Cailliez, R. Lavery,
Biophys. J. (2004) 87-3 p.1426
2 Myosin flexibility: Structural domains and collective vibrations
I. Navizet, R. Lavery, RL. Jernigan,
Proteins (2004) 54-3 p.384
3 Analyzing protein-DNA recognition mechanisms
G. Paillard, R. Lavery,
Structure (2004) 12-1 p.113
4 Influence of conformational dynamics on the exciton states of DNA oligomers
B. Bouvier, JP. Dognon, R. Lavery, D. Markovitsi, P. Millie, D. Onidas, K. Zakrzewska,
J. Phys. Chem. B (2003) 107-48 p.13512
5 Docking macromolecules with flexible segments
K. Bastard, A. Thureau, R. Lavery, C. Prevost,
J. Comput. Chem. (2003) 24-15 p.1910
6 Nucleic acid base pair dynamics: The impact of sequence and structure using free-energy calculations
E. Giudice, R. Lavery,
J. Am. Chem. Soc. (2003) 125-17 p.4998
7 Base pair opening within B-DNA: free energy pathways for GC and AT pairs from umbrella sampling simulations
E. Giudice, P. Varnai, R. Lavery,
Nucleic Acids Res. (2003) 31-5 p.1434
8 Motifs in nucleic acids: Molecular mechanics restraints for base pairing and base stacking
SC. Harvey, CL. Wang, S. Teletchea, R. Lavery,
J. Comput. Chem. (2003) 24-1 p.1
9 alpha/gamma Transitions in the B-DNA backbone
P. Varnai, D. Djuranovic, R. Lavery, B. Hartmann,
Nucleic Acids Res. (2002) 30-24 p.5398
10 Base flipping in DNA: Pathways and energetics studied with molecular dynamic simulations
P. Varnai, R. Lavery,
J. Am. Chem. Soc. (2002) 124-25 p.7272
11 Simulations of nucleic acids and their complexes
E. Giudice, R. Lavery,
Accounts Chem. Res. (2002) 35-6 p.350
12 Structure and mechanics of single biomolecules: experiment and simulation
R. Lavery, A. Lebrun, JF. Allemand, D. Bensimon, V. Croquette,
J. Phys.-Condes. Matter (2002) 14-14 p.R383
13 High-speed molecular mechanics searches for optimal DNA interaction sites
I. Lafontaine, R. Lavery,
Comb. Chem. High Throughput Screen (2001) 4-8 p.707
14 Energetic and conformational aspects of A : T base-pair opening within the DNA double helix
E. Giudice, P. Varnai, R. Lavery,
ChemPhysChem (2001) 2-11 p.673
15 Modeling multi-component protein-DNA complexes: the role of bending and dimerization in the complex of p53 dimers with DNA
A. Lebrun, R. Lavery, H. Weinstein,
Protein Eng. (2001) 14-4 p.233
16 Optimization of nucleic acid sequences
I. Lafontaine, R. Lavery,
Biophys. J. (2000) 79-2 p.680
17 Methylene blue binding to DNA with alternating GC base sequence: A modeling study
R. Rohs, H. Sklenar, R. Lavery, B. Roder,
J. Am. Chem. Soc. (2000) 122-12 p.2860
18 Perspective on "Stereochemistry of polypeptide chain conformations" - Ramachandran GN, Ramakrishnan C, Sasisekharan V (1963) J Mol Biol 7 : 95-9
R. Lavery,
Theor. Chem. Acc. (2000) 103-3-4 p.257
19 The impact of abasic sites on DNA flexibility
L. Ayadi, C. Coulombeau, R. Lavery,
J. Biomol. Struct. Dyn. (2000) 17-4 p.645
20 A mechanism for RecA-promoted sequence homology recognition and strand exchange between single-stranded DNA and duplex DNA, via triple-helical intermediates
G. Bertucat, R. Lavery, C. Prevost,
J. Biomol. Struct. Dyn. (2000) - p.147

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